Phyto4Health

Ginsenoside Rb1

Representations & DB's id
ChEBI: CHEBI:67989
ChEMBL: CHEMBL501515
PubChem: 9898279
IUPAC: (2R,3R,4S,5S,6R)-2-[[(2R,3S,4S,5R,6S)-6-[(2S)-2-[(3S,5R,8R,9R,10R,12R,13R,14R,17S)-3-[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxy-12-hydroxy-4,4,8,10,14-pentamethyl-2,3,5,6,7,9,11,12,13,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-17-yl]-6-methylhept-5-en-2-yl]oxy-3,4,5-trihydroxyoxan-2-yl]methoxy]-6-(hydroxymethyl)oxane-3,4,5-triol
Standard InChI: InChI=1S/C54H92O23/c1-23(2)10-9-14-54(8,77-48-44(69)40(65)37(62)29(74-48)22-70-46-42(67)38(63)34(59)26(19-55)71-46)24-11-16-53(7)33(24)25(58)18-31-51(5)15-13-32(50(3,4)30(51)12-17-52(31,53)6)75-49-45(41(66)36(61)28(21-57)73-49)76-47-43(68)39(64)35(60)27(20-56)72-47/h10,24-49,55-69H,9,11-22H2,1-8H3/t24-,25+,26+,27+,28+,29+,30-,31+,32-,33-,34+,35+,36+,37+,38-,39-,40-,41-,42+,43+,44+,45+,46+,47-,48-,49-,51-,52+,53+,54-/m0/s1
Standard InChI Key: GZYPWOGIYAIIPV-JBDTYSNRSA-N
SMILES: OC[C@H]1O[C@@H](O[C@H]2CC[C@]3([C@H](C2(C)C)CC[C@@]2([C@@H]3C[C@@H](O)[C@H]3[C@@]2(C)CC[C@@H]3[C@@](O[C@@H]2O[C@H](CO[C@@H]3O[C@H](CO)[C@H]([C@@H]([C@H]3O)O)O)[C@H]([C@@H]([C@H]2O)O)O)(CCC=C(C)C)C)C)C)[C@@H]([C@H]([C@@H]1O)O)O[C@@H]1O[C@H](CO)[C@H]([C@@H]([C@H]1O)O)O

Molecular propeties
AlogP: -4.4527
Hydrogen bonds acceptors: 23
Hydrogen bonds donors: 15
Rotatable bonds: 16
Number of rings: 8
Molecular Weight: 1108.6
Topological polar surface area: 377
Number of aromatic rings: 0
Fsp3: 0.963
Number of carbons: 54

Plant sources

Part of plant Plant name Ref.
RubraPanax ginseng
RubraPanax ginseng
RubraPanax ginseng
RubraPanax ginseng

In vitro data

Activity Type Activity Value Target Name UniProt ID Ref.
IC50250000 nMDNA topoisomerase II alphaP11388
IC50250000 nMDNA topoisomerase IP11387
Others104.6 %Isocitrate dehydrogenase [NADP] cytoplasmicO75874
Others116.7 %Isocitrate dehydrogenase [NADP] cytoplasmicO75874