Phyto4Health

Naringin

Representations & DB's id

ChEBI: CHEBI:28819
ChEMBL: CHEMBL451532
PubChem: 442428
IUPAC: (2S)-7-[(2S,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-5-hydroxy-2-(4-hydroxyphenyl)-2,3-dihydrochromen-4-one
Standard InChI: InChI=1S/C27H32O14/c1-10-20(32)22(34)24(36)26(37-10)41-25-23(35)21(33)18(9-28)40-27(25)38-13-6-14(30)19-15(31)8-16(39-17(19)7-13)11-2-4-12(29)5-3-11/h2-7,10,16,18,20-30,32-36H,8-9H2,1H3/t10-,16-,18+,20-,21+,22+,23-,24+,25+,26-,27+/m0/s1
Standard InChI Key: DFPMSGMNTNDNHN-ZPHOTFPESA-N
SMILES: OC[C@H]1O[C@@H](Oc2cc(O)c3c(c2)O[C@@H](CC3=O)c2ccc(cc2)O)[C@@H]([C@H]([C@@H]1O)O)O[C@@H]1O[C@@H](C)[C@@H]([C@H]([C@H]1O)O)O

Molecular propeties

AlogP: -1.17
Hydrogen bonds acceptors: 14
Hydrogen bonds donors: 8
Rotatable bonds: 6
Number of rings: 5
Molecular Weight: 580.18
Topological polar surface area: 225
Number of aromatic rings: 2
Fsp3: 0.519
Number of carbons: 27

Plant sources

Part of plant Plant name Ref.
PlantPrunus laurocerasus
PlantCitrus unshiu
PlantHelianthus annuus
PlantHelianthus annuus
PlantRheum palmatum
PlantSalvia officinalis
PlantCrocus sativus

In vitro data

Activity Type Activity Value Target Name UniProt ID Ref.
IC5060000 nMProtein-tyrosine phosphatase 1BP18031
IC5012181 nMUbiquitin-conjugating enzyme E2 NP61088
IC508695 nMUbiquitin-conjugating enzyme E2 NP61088
Potency44668.4 nMHistone-lysine N-methyltransferase, H3 lysine-9 specific 3Q96KQ7
IC505771 nMUbiquitin-conjugating enzyme E2 NP61088
IC506662 nMUbiquitin-conjugating enzyme E2 NP61088
Others0 pm/min/mgUDP-glucuronosyltransferase 1-1P22309
Others0 pm/min/mgUDP-glucuronosyltransferase 1A4P22310
Others0 pm/min/mgUDP-glucuronosyltransferase 2B15P54855
Potency1258.9 nMGemininO75496
Potency891.3 nMTranscriptional regulator ERGP11308
Others47.1 %Solute carrier organic anion transporter family member 2B1O94956
Others37.7 %Solute carrier organic anion transporter family member 1B3Q9NPD5
Others34 %Solute carrier organic anion transporter family member 1B1Q9Y6L6
IC50100000 nMGlycogen synthase kinase-3 betaP49841
Kd1000000 nMHeparanaseQ9Y251