Phyto4Health

Berberine

Representations & DB's id

ChEBI: CHEBI:16118
ChEMBL: CHEMBL295124
PubChem: 2353
IUPAC: 16,17-dimethoxy-5,7-dioxa-13-azoniapentacyclo[11.8.0.02,10.04,8.015,20]henicosa-1(13),2,4(8),9,14,16,18,20-octaene
Standard InChI: InChI=1S/C20H18NO4/c1-22-17-4-3-12-7-16-14-9-19-18(24-11-25-19)8-13(14)5-6-21(16)10-15(12)20(17)23-2/h3-4,7-10H,5-6,11H2,1-2H3/q+1
Standard InChI Key: YBHILYKTIRIUTE-UHFFFAOYSA-N
SMILES: COc1c(OC)ccc2c1c[n+]1CCc3c(c1c2)cc1c(c3)OCO1

Molecular propeties

AlogP: 3.1
Hydrogen bonds acceptors: 4
Hydrogen bonds donors: 0
Rotatable bonds: 2
Number of rings: 5
Molecular Weight: 336.12
Topological polar surface area: 40.8
Number of aromatic rings: 3
Fsp3: 0.25
Number of carbons: 20

Plant sources

Part of plant Plant name Ref.
HerbaChelidonium majus

In vitro data

Activity Type Activity Value Target Name UniProt ID Ref.
Potency7079.5 nMSurvival motor neuron proteinQ16637
Potency12589.3 nMThyroid stimulating hormone receptorP16473
Potency12589.3 nMMicrotubule-associated protein tauP10636
Potency2511.9 nMHypoxia-inducible factor 1 alphaQ16665
Potency44668.4 nMAldehyde dehydrogenase 1A1P00352
Potency2511.9 nMHypoxia-inducible factor 1 alphaQ16665
Potency2511.9 nMCytochrome P450 2D6P10635
Potency12589.3 nMCytochrome P450 3A4P08684
Potency12589.3 nMCytochrome P450 3A4P08684
IC5066069.34 nMHERGQ12809
Others18.5 %Solute carrier organic anion transporter family member 2B1O94956
Others19.4 %Solute carrier organic anion transporter family member 1B3Q9NPD5
Others32 %Solute carrier organic anion transporter family member 1B1Q9Y6L6
IC50100 nMAcetylcholinesteraseP22303
IC501090 nMButyrylcholinesteraseP06276