DIGEP-Pred: Prediction of drug-induced changes of gene expression profile
DIGEP-Pred is a web-service for in silico prediction of drug-induced changes of gene expression profiles based on structural formula.
Prediction is based on PASS (Prediction of Activity Spectra for Substances) technology and training sets created on the basis of data on drug-induced changes of gene expression profiles retrieved from Comparative Toxicogenomics Database (CTD), Connectivity Map Database and L1000 Project.
Use SMILES, MOL file or MarvinSketch applet for input data on a structure of test compound.
Curated chemical gene interactions data in the training sets were retrieved from the Comparative Toxicogenomics Database (CTD), Mount Desert Island Biological Laboratory, Salisbury Cove, Maine. http://ctdbase.org/ [October, 2015].
Lagunin A., Ivanov S., Rudik A., Filimonov D., Poroikov V. DIGEP-Pred: web-service for in silico prediction of drug-induced gene expression profiles based on structural formula. Bioinformatics, 2013, 29, 2062-2063. [Abstract, PDF]